/EXTERNAL CREST/mapping_coverage/K006446_1_lane_gembs
BACK
SAMPLE K006446_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1710163301 |
100% |
159358032536 |
100% |
| Mapped |
1648404642 |
96.39 % |
153120407977 |
96.09 % |
| Passed |
644294295 |
37.67 % |
51705262930 |
32.45 % |
| NotPassed |
1004110347 |
58.71 % |
101415145047 |
63.64 % |
| |
|
|
|
|
| LowMAPQ |
508864300 |
29.76 % |
51395294300 |
32.25 % |
| MateUnmapped |
61758659 |
3.61 % |
6237624559 |
3.91 % |
| Duplicate |
85799675 |
5.02 % |
8665767175 |
5.44 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
288916 |
0.02 % |
29180516 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
409157456 |
23.93 % |
41324903056 |
25.93 % |
| Unmapped |
61758659 |
3.61 % |
6237624559 |
3.91 % |
Base Level Counts
| Bases |
# |
% |
| Total |
65002390222 |
100% |
| Passed |
48416965366 |
74.48 % |
| Trimmed |
2587174610 |
3.98 % |
| Clipped |
1667159579 |
2.56 % |
| Overlapping |
11629967713 |
17.89 % |
| LowQuality |
701122954 |
1.08 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |