/EXTERNAL CREST/methylation/K006446_1_lane_gembs

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SAMPLE K006446_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25582714 12042233 47.07 %
NonRefCpG 557747 73213 13.13 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006446_1_lane_gembs_coverage_refCpG.png ./IMG//K006446_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006446_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006446_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006446_1_lane_gembs_quality_refcpg.png ./IMG//K006446_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006446_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 13235654 27.58 % 7396366 24.15 % 431936 44.63 % 82020 27.88 %
Intermediate (0.3-0.7) 16752405 34.91 % 9540014 31.14 % 314748 32.52 % 101019 34.34 %
Methylated (0.7-1) 18005795 37.52 % 13696656 44.71 % 221083 22.84 % 111150 37.78 %
Median Methylation 0.570 0.640 0.360 0.560