/EXTERNAL CREST/K006448_1_lane_gembs/JKU011.Bisulfite-Seq.DNA_Methylation.JGAX00000011793.JKU011_WGBS
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 1751654736 | 100.00 % | 875827368 | 100.00 % | 875827368 | 100.00 % |
| General Reads | 1649866088 | 94.19 % | 847586748 | 96.78 % | 802279340 | 91.60 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 14289107 | 0.82 % | 6914709 | 0.79 % | 7374398 | 0.84 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 87499541 | 5.00 % | 21325911 | 2.43 % | 66173630 | 7.56 % |
| Bisulfite_reads C2T | 845926845 | 48.29 % | 434625547 | 49.62 % | 411301298 | 46.96 % |
| Bisulfite_reads G2A | 818228350 | 46.71 % | 419875910 | 47.94 % | 398352440 | 45.48 % |
| Concept | Value |
|---|---|
| Unique Fragments | 383049066 |
| Average Unique | 43.74 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 65263156330 | 36.53 % | 40535671517 | 45.38 % | 24727484813 | 27.68 % |
| Base Counts Overall C | 24786259417 | 13.87 % | 20673497205 | 23.14 % | 4112762212 | 4.60 % |
| Base Counts Overall G | 24318585089 | 13.61 % | 2314384813 | 2.59 % | 22004200276 | 24.63 % |
| Base Counts Overall T | 62535347110 | 35.00 % | 24928404554 | 27.90 % | 37606942556 | 42.10 % |
| Base Counts Overall N | 1765435126 | 0.99 % | 882433447 | 0.99 % | 883001679 | 0.99 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9827129189721977 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 506286896 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 101 | 875827368 |
| 101 | 875827368 |
| Insert Size Histogram |
|---|
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