/EXTERNAL CREST/methylation/K006448_1_lane_gembs

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SAMPLE K006448_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25677231 15538048 60.51 %
NonRefCpG 520985 107295 20.59 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006448_1_lane_gembs_coverage_refCpG.png ./IMG//K006448_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006448_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006448_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006448_1_lane_gembs_quality_refcpg.png ./IMG//K006448_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006448_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8929236 18.35 % 5529838 15.67 % 327512 36.28 % 56620 17.28 %
Intermediate (0.3-0.7) 11534332 23.70 % 6838347 19.37 % 252581 27.98 % 77870 23.77 %
Methylated (0.7-1) 28194720 57.94 % 22929403 64.96 % 322548 35.73 % 193103 58.95 %
Median Methylation 0.770 0.820 0.500 0.780