/EXTERNAL CREST/mapping_coverage/K006440_1_lane_gembs
BACK
SAMPLE K006440_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1905695480 |
100% |
177285567742 |
100% |
| Mapped |
1791660921 |
94.02 % |
165768077283 |
93.50 % |
| Passed |
670612227 |
35.19 % |
52542159189 |
29.64 % |
| NotPassed |
1121048694 |
58.83 % |
113225918094 |
63.87 % |
| |
|
|
|
|
| LowMAPQ |
593973624 |
31.17 % |
59991336024 |
33.84 % |
| MateUnmapped |
114034559 |
5.98 % |
11517490459 |
6.50 % |
| Duplicate |
81794927 |
4.29 % |
8261287627 |
4.66 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
295678 |
0.02 % |
29863478 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
444984465 |
23.35 % |
44943430965 |
25.35 % |
| Unmapped |
114034559 |
5.98 % |
11517490459 |
6.50 % |
Base Level Counts
| Bases |
# |
% |
| Total |
67671021009 |
100% |
| Passed |
48929892908 |
72.31 % |
| Trimmed |
2632953285 |
3.89 % |
| Clipped |
1908916286 |
2.82 % |
| Overlapping |
13219945534 |
19.54 % |
| LowQuality |
979312996 |
1.45 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |