/EXTERNAL CREST/K006439_1_lane_gembs/JKU001.Bisulfite-Seq.DNA_Methylation.JGAX00000011712.JKU001_WGBS

BACK

SAMPLE K006439_1_lane_gembs LANE JKU001.Bisulfite-Seq.DNA_Methylation.JGAX00000011712.JKU001_WGBS

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2132672758 100.00 % 1066336379 100.00 % 1066336379 100.00 %
General Reads 2006244521 94.07 % 1032829780 96.86 % 973414741 91.29 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 559527 0.03 % 272112 0.03 % 287415 0.03 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 125868710 5.90 % 33234487 3.12 % 92634223 8.69 %
Bisulfite_reads C2T 1021867244 47.91 % 526271643 49.35 % 495595601 46.48 %
Bisulfite_reads G2A 984936804 46.18 % 506830249 47.53 % 478106555 44.84 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 437191654
Average Unique 41.00 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 78335513035 36.01 % 49305149668 45.33 % 29030363367 26.69 %
Base Counts Overall C 30352566451 13.95 % 26173848621 24.06 % 4178717830 3.84 %
Base Counts Overall G 30696467427 14.11 % 2136555908 1.96 % 28559911519 26.26 %
Base Counts Overall T 75976394102 34.93 % 30076301479 27.65 % 45900092623 42.20 %
Base Counts Overall N 2171680301 1.00 % 1074454982 0.99 % 1097225319 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9705074304336987
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 588023626



Mapping Quality

Mapping Quality Histogram
JKU001.Bisulfite-Seq.DNA_Methylation.JGAX00000011712.JKU001_WGBS.mapq.png



Read Length

Read Length Reads
101 1066336379
101 1066336379



Insert Size Plot

Insert Size Histogram
JKU001.Bisulfite-Seq.DNA_Methylation.JGAX00000011712.JKU001_WGBS.isize.png