/EXTERNAL CREST/mapping_coverage/K006439_1_lane_gembs
BACK
SAMPLE K006439_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1906099093 |
100% |
178506970403 |
100% |
| Mapped |
1816803515 |
95.32 % |
169488117025 |
94.95 % |
| Passed |
683974104 |
35.88 % |
55072346514 |
30.85 % |
| NotPassed |
1132829411 |
59.43 % |
114415770511 |
64.10 % |
| |
|
|
|
|
| LowMAPQ |
535413934 |
28.09 % |
54076807334 |
30.29 % |
| MateUnmapped |
89295578 |
4.68 % |
9018853378 |
5.05 % |
| Duplicate |
101550122 |
5.33 % |
10256562322 |
5.75 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
325208 |
0.02 % |
32846008 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
495540147 |
26.00 % |
50049554847 |
28.04 % |
| Unmapped |
89295578 |
4.68 % |
9018853378 |
5.05 % |
Base Level Counts
| Bases |
# |
% |
| Total |
69018014579 |
100% |
| Passed |
51455678143 |
74.55 % |
| Trimmed |
2737873637 |
3.97 % |
| Clipped |
1848612471 |
2.68 % |
| Overlapping |
12097055594 |
17.53 % |
| LowQuality |
878794734 |
1.27 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |