/EXTERNAL CREST/methylation/K006439_1_lane_gembs

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SAMPLE K006439_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25740172 14477950 56.25 %
NonRefCpG 504956 82678 16.37 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006439_1_lane_gembs_coverage_refCpG.png ./IMG//K006439_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006439_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006439_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006439_1_lane_gembs_quality_refcpg.png ./IMG//K006439_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006439_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 11208520 23.04 % 6979778 20.32 % 365998 41.61 % 70104 23.39 %
Intermediate (0.3-0.7) 15338999 31.53 % 9464218 27.56 % 274841 31.25 % 94544 31.54 %
Methylated (0.7-1) 22099532 45.43 % 17899355 52.12 % 238665 27.14 % 135101 45.07 %
Median Methylation 0.650 0.710 0.400 0.640