/EXTERNAL McGill EMC/K006194_1_lane_gembs

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SAMPLE K006194_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 676365366 100.00 % 338182683 100.00 % 338182683 100.00 %
General Reads 662680809 97.98 % 332159091 98.22 % 330521718 97.73 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 8368 0.00 % 4193 0.00 % 4175 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 13676189 2.02 % 6019399 1.78 % 7656790 2.26 %
Bisulfite_reads C2T 338195079 50.00 % 169506596 50.12 % 168688483 49.88 %
Bisulfite_reads G2A 324494098 47.98 % 162656688 48.10 % 161837410 47.86 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 278565382
Average Unique 82.37 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 26859621605 39.32 % 10855458092 31.78 % 16004163513 46.86 %
Base Counts Overall C 7036476396 10.30 % 369021080 1.08 % 6667455316 19.52 %
Base Counts Overall G 7065643736 10.34 % 6715925607 19.66 % 349718129 1.02 %
Base Counts Overall T 26665032352 39.03 % 15871452610 46.47 % 10793579742 31.60 %
Base Counts Overall N 686127877 1.00 % 344593594 1.01 % 341534283 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9886280299772741
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 315541639



Mapping Quality

Mapping Quality Histogram
K006194_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006194_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0479.Bisulfite-Seq.DNA_Methylation.EGAX00001425425.release_6