/EXTERNAL McGill EMC/mapping_coverage/K006194_1_lane_gembs
BACK
SAMPLE K006194_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
649371307 |
100% |
55906448574 |
100% |
| Mapped |
644390703 |
99.23 % |
55408388174 |
99.11 % |
| Passed |
534233340 |
82.27 % |
44392651874 |
79.41 % |
| NotPassed |
110157363 |
16.96 % |
11015736300 |
19.70 % |
| |
|
|
|
|
| LowMAPQ |
77385334 |
11.92 % |
7738533400 |
13.84 % |
| MateUnmapped |
4980604 |
0.77 % |
498060400 |
0.89 % |
| Duplicate |
13361260 |
2.06 % |
1336126000 |
2.39 % |
| BadOrientation |
42 |
0.00 % |
4200 |
0.00 % |
| LargeInsertSize |
109668 |
0.02 % |
10966800 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
19301059 |
2.97 % |
1930105900 |
3.45 % |
| Unmapped |
4980604 |
0.77 % |
498060400 |
0.89 % |
Base Level Counts
| Bases |
# |
% |
| Total |
53418629600 |
100% |
| Passed |
41610970301 |
77.90 % |
| Trimmed |
2317133592 |
4.34 % |
| Clipped |
50996105 |
0.10 % |
| Overlapping |
8974981621 |
16.80 % |
| LowQuality |
464547981 |
0.87 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |