/EXTERNAL McGill EMC/methylation/K006194_1_lane_gembs

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SAMPLE K006194_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26068731 12406575 47.59 %
NonRefCpG 220334 69116 31.37 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006194_1_lane_gembs_coverage_refCpG.png ./IMG//K006194_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006194_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006194_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006194_1_lane_gembs_quality_refcpg.png ./IMG//K006194_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006194_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5522689 11.08 % 1122464 3.90 % 73801 18.08 % 8942 4.94 %
Intermediate (0.3-0.7) 13284326 26.64 % 5923390 20.59 % 117496 28.78 % 38693 21.37 %
Methylated (0.7-1) 31056188 62.28 % 21717843 75.50 % 216942 53.14 % 133465 73.70 %
Median Methylation 0.780 0.850 0.720 0.840