/EXTERNAL McGill EMC/K006198_1_lane_gembs

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SAMPLE K006198_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1256465474 100.00 % 628232737 100.00 % 628232737 100.00 %
General Reads 1232625796 98.10 % 617658354 98.32 % 614967442 97.89 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 10089 0.00 % 5052 0.00 % 5037 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 23829589 1.90 % 10569331 1.68 % 13260258 2.11 %
Bisulfite_reads C2T 629359511 50.09 % 315348780 50.20 % 314010731 49.98 %
Bisulfite_reads G2A 603276374 48.01 % 302314626 48.12 % 300961748 47.91 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 519012320
Average Unique 82.61 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 49541001320 39.04 % 19784121936 31.18 % 29756879384 46.90 %
Base Counts Overall C 13386042904 10.55 % 700629825 1.10 % 12685413079 19.99 %
Base Counts Overall G 13378142863 10.54 % 12718123190 20.04 % 660019673 1.04 %
Base Counts Overall T 49281342810 38.83 % 29599328535 46.65 % 19682014275 31.02 %
Base Counts Overall N 1316482977 1.04 % 649302951 1.02 % 667180026 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9866582061417978
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 586161089



Mapping Quality

Mapping Quality Histogram
K006198_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006198_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0481.Bisulfite-Seq.DNA_Methylation.EGAX00001425443.release_6