/EXTERNAL McGill EMC/mapping_coverage/K006198_1_lane_gembs
BACK
SAMPLE K006198_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1222352823 |
100% |
105300668258 |
100% |
| Mapped |
1213543469 |
99.28 % |
104419732858 |
99.16 % |
| Passed |
1024327264 |
83.80 % |
85498112358 |
81.19 % |
| NotPassed |
189216205 |
15.48 % |
18921620500 |
17.97 % |
| |
|
|
|
|
| LowMAPQ |
140346320 |
11.48 % |
14034632000 |
13.33 % |
| MateUnmapped |
8809354 |
0.72 % |
880935400 |
0.84 % |
| Duplicate |
10305545 |
0.84 % |
1030554500 |
0.98 % |
| BadOrientation |
70 |
0.00 % |
7000 |
0.00 % |
| LargeInsertSize |
174040 |
0.01 % |
17404000 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
38390230 |
3.14 % |
3839023000 |
3.65 % |
| Unmapped |
8809354 |
0.72 % |
880935400 |
0.84 % |
Base Level Counts
| Bases |
# |
% |
| Total |
102427436800 |
100% |
| Passed |
80275171542 |
78.37 % |
| Trimmed |
4479816798 |
4.37 % |
| Clipped |
95900329 |
0.09 % |
| Overlapping |
16833424113 |
16.43 % |
| LowQuality |
743124018 |
0.73 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |