/EXTERNAL McGill EMC/methylation/K006198_1_lane_gembs

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SAMPLE K006198_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26560689 21333976 80.32 %
NonRefCpG 145192 79905 55.03 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006198_1_lane_gembs_coverage_refCpG.png ./IMG//K006198_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006198_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006198_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006198_1_lane_gembs_quality_refcpg.png ./IMG//K006198_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006198_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5551396 10.63 % 3185367 7.06 % 30984 11.52 % 7358 4.01 %
Intermediate (0.3-0.7) 10443738 20.01 % 8272314 18.34 % 64310 23.92 % 35434 19.32 %
Methylated (0.7-1) 36209946 69.36 % 33640631 74.59 % 173600 64.56 % 140581 76.66 %
Median Methylation 0.830 0.850 0.800 0.850