/EXTERNAL McGill EMC/K006200_1_lane_gembs

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SAMPLE K006200_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 693299914 100.00 % 346649957 100.00 % 346649957 100.00 %
General Reads 678810795 97.91 % 340443864 98.21 % 338366931 97.61 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 10549 0.00 % 5301 0.00 % 5248 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 14478570 2.09 % 6200792 1.79 % 8277778 2.39 %
Bisulfite_reads C2T 346618051 50.00 % 173831934 50.15 % 172786117 49.84 %
Bisulfite_reads G2A 332203293 47.92 % 166617231 48.06 % 165586062 47.77 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 283801907
Average Unique 81.87 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 27474971117 39.24 % 11023112698 31.48 % 16451858419 46.99 %
Base Counts Overall C 7270143611 10.38 % 373186709 1.07 % 6896956902 19.70 %
Base Counts Overall G 7263322238 10.37 % 6915790316 19.75 % 347531922 0.99 %
Base Counts Overall T 27279260030 38.96 % 16348153139 46.69 % 10931106891 31.22 %
Base Counts Overall N 735594318 1.05 % 351402795 1.00 % 384191523 1.10 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9908401315660772
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 320645607



Mapping Quality

Mapping Quality Histogram
K006200_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006200_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0473.Bisulfite-Seq.DNA_Methylation.EGAX00001425371.release_6