/EXTERNAL McGill EMC/mapping_coverage/K006200_1_lane_gembs
BACK
SAMPLE K006200_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
669544236 |
100% |
57129849297 |
100% |
| Mapped |
663867225 |
99.15 % |
56562148197 |
99.01 % |
| Passed |
553061187 |
82.60 % |
45481544397 |
79.61 % |
| NotPassed |
110806038 |
16.55 % |
11080603800 |
19.40 % |
| |
|
|
|
|
| LowMAPQ |
79501878 |
11.87 % |
7950187800 |
13.92 % |
| MateUnmapped |
5677011 |
0.85 % |
567701100 |
0.99 % |
| Duplicate |
9306498 |
1.39 % |
930649800 |
1.63 % |
| BadOrientation |
38 |
0.00 % |
3800 |
0.00 % |
| LargeInsertSize |
97104 |
0.01 % |
9710400 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
21900520 |
3.27 % |
2190052000 |
3.83 % |
| Unmapped |
5677011 |
0.85 % |
567701100 |
0.99 % |
Base Level Counts
| Bases |
# |
% |
| Total |
55302059700 |
100% |
| Passed |
42624304934 |
77.08 % |
| Trimmed |
2389151418 |
4.32 % |
| Clipped |
65701128 |
0.12 % |
| Overlapping |
9754814175 |
17.64 % |
| LowQuality |
468088045 |
0.85 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |