/EXTERNAL McGill EMC/methylation/K006200_1_lane_gembs

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SAMPLE K006200_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26103655 13511566 51.76 %
NonRefCpG 208305 72601 34.85 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006200_1_lane_gembs_coverage_refCpG.png ./IMG//K006200_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006200_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006200_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006200_1_lane_gembs_quality_refcpg.png ./IMG//K006200_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006200_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5708076 11.35 % 1455089 4.64 % 64558 16.69 % 9398 5.00 %
Intermediate (0.3-0.7) 13317624 26.49 % 6649448 21.22 % 111195 28.74 % 41213 21.91 %
Methylated (0.7-1) 31253145 62.16 % 23224975 74.13 % 211117 54.57 % 137513 73.10 %
Median Methylation 0.780 0.840 0.730 0.840