/EXTERNAL McGill EMC/K006202_1_lane_gembs

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SAMPLE K006202_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 993034930 100.00 % 496517465 100.00 % 496517465 100.00 %
General Reads 973581287 98.04 % 488058838 98.30 % 485522449 97.79 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 16240 0.00 % 8143 0.00 % 8097 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 19437403 1.96 % 8450484 1.70 % 10986919 2.21 %
Bisulfite_reads C2T 497064487 50.06 % 249166740 50.18 % 247897747 49.93 %
Bisulfite_reads G2A 476533040 47.99 % 238900241 48.12 % 237632799 47.86 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 413603037
Average Unique 83.30 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 39258421576 39.14 % 15686315128 31.28 % 23572106448 47.00 %
Base Counts Overall C 10488661762 10.46 % 543815078 1.08 % 9944846684 19.83 %
Base Counts Overall G 10495740205 10.46 % 9991097057 19.92 % 504643148 1.01 %
Base Counts Overall T 38992062289 38.88 % 23419405489 46.70 % 15572656800 31.05 %
Base Counts Overall N 1061642098 1.06 % 507631213 1.01 % 554010885 1.10 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9910367115674171
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 467763278



Mapping Quality

Mapping Quality Histogram
K006202_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006202_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0475.Bisulfite-Seq.DNA_Methylation.EGAX00001425389.release_6