/EXTERNAL McGill EMC/K006202_1_lane_gembs/McGill0475.Bisulfite-Seq.DNA_Methylation.EGAX00001425389.release_6

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SAMPLE K006202_1_lane_gembs LANE McGill0475.Bisulfite-Seq.DNA_Methylation.EGAX00001425389.release_6

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	993034930	100.00 %	496517465	100.00 %	496517465	100.00 %
General Reads	973581287	98.04 %	488058838	98.30 %	485522449	97.79 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	16240	0.00 %	8143	0.00 %	8097	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	19437403	1.96 %	8450484	1.70 %	10986919	2.21 %
Bisulfite_reads C2T	497064487	50.06 %	249166740	50.18 %	247897747	49.93 %
Bisulfite_reads G2A	476533040	47.99 %	238900241	48.12 %	237632799	47.86 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	413603037
Average Unique	83.30 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	39258421576	39.14 %	15686315128	31.28 %	23572106448	47.00 %
Base Counts Overall C	10488661762	10.46 %	543815078	1.08 %	9944846684	19.83 %
Base Counts Overall G	10495740205	10.46 %	9991097057	19.92 %	504643148	1.01 %
Base Counts Overall T	38992062289	38.88 %	23419405489	46.70 %	15572656800	31.05 %
Base Counts Overall N	1061642098	1.06 %	507631213	1.01 %	554010885	1.10 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9910367115674171
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	467763278

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	496517465
100	496517465

Insert Size Plot

Insert Size Histogram