/EXTERNAL McGill EMC/mapping_coverage/K006202_1_lane_gembs
BACK
SAMPLE K006202_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
963150806 |
100% |
85229035236 |
100% |
| Mapped |
955556351 |
99.21 % |
84469589736 |
99.11 % |
| Passed |
811566214 |
84.26 % |
70070576036 |
82.21 % |
| NotPassed |
143990137 |
14.95 % |
14399013700 |
16.89 % |
| |
|
|
|
|
| LowMAPQ |
111481134 |
11.57 % |
11148113400 |
13.08 % |
| MateUnmapped |
7594455 |
0.79 % |
759445500 |
0.89 % |
| Duplicate |
10457747 |
1.09 % |
1045774700 |
1.23 % |
| BadOrientation |
22 |
0.00 % |
2200 |
0.00 % |
| LargeInsertSize |
154478 |
0.02 % |
15447800 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
21896756 |
2.27 % |
2189675600 |
2.57 % |
| Unmapped |
7594455 |
0.79 % |
759445500 |
0.89 % |
Base Level Counts
| Bases |
# |
% |
| Total |
81149495500 |
100% |
| Passed |
65745901042 |
81.02 % |
| Trimmed |
3604183534 |
4.44 % |
| Clipped |
83264265 |
0.10 % |
| Overlapping |
10995655199 |
13.55 % |
| LowQuality |
720491460 |
0.89 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |