/EXTERNAL McGill EMC/methylation/K006202_1_lane_gembs

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SAMPLE K006202_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26407511 19192338 72.68 %
NonRefCpG 163917 84032 51.26 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006202_1_lane_gembs_coverage_refCpG.png ./IMG//K006202_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006202_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006202_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006202_1_lane_gembs_quality_refcpg.png ./IMG//K006202_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006202_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5691428 11.01 % 2533826 6.11 % 38948 12.79 % 8687 4.42 %
Intermediate (0.3-0.7) 10845445 20.98 % 7600097 18.32 % 74670 24.52 % 37656 19.17 %
Methylated (0.7-1) 35155410 68.01 % 31359908 75.58 % 190868 62.68 % 150105 76.41 %
Median Methylation 0.820 0.850 0.790 0.850