/EXTERNAL McGill EMC/mapping_coverage/K006203_1_lane_gembs
BACK
SAMPLE K006203_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1965215722 |
100% |
168858869756 |
100% |
| Mapped |
1950643524 |
99.26 % |
167401649956 |
99.14 % |
| Passed |
1618920815 |
82.38 % |
134229379056 |
79.49 % |
| NotPassed |
331722709 |
16.88 % |
33172270900 |
19.64 % |
| |
|
|
|
|
| LowMAPQ |
241410902 |
12.28 % |
24141090200 |
14.30 % |
| MateUnmapped |
14572198 |
0.74 % |
1457219800 |
0.86 % |
| Duplicate |
28725297 |
1.46 % |
2872529700 |
1.70 % |
| BadOrientation |
92 |
0.00 % |
9200 |
0.00 % |
| LargeInsertSize |
348546 |
0.02 % |
34854600 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
61237872 |
3.12 % |
6123787200 |
3.63 % |
| Unmapped |
14572198 |
0.74 % |
1457219800 |
0.86 % |
Base Level Counts
| Bases |
# |
% |
| Total |
161884769500 |
100% |
| Passed |
125925944297 |
77.79 % |
| Trimmed |
7031603212 |
4.34 % |
| Clipped |
152633905 |
0.09 % |
| Overlapping |
27502756539 |
16.99 % |
| LowQuality |
1271831547 |
0.79 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |