/EXTERNAL McGill EMC/methylation/K006203_1_lane_gembs

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SAMPLE K006203_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26673388 23518354 88.17 %
NonRefCpG 126827 74236 58.53 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006203_1_lane_gembs_coverage_refCpG.png ./IMG//K006203_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006203_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006203_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006203_1_lane_gembs_quality_refcpg.png ./IMG//K006203_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006203_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5570942 10.59 % 4198076 8.66 % 22980 9.80 % 6164 3.68 %
Intermediate (0.3-0.7) 8538407 16.23 % 7432067 15.34 % 47836 20.39 % 26692 15.94 %
Methylated (0.7-1) 38507140 73.18 % 36823404 76.00 % 163751 69.81 % 134611 80.38 %
Median Methylation 0.850 0.860 0.820 0.860