/EXTERNAL McGill EMC/mapping_coverage/K006204_1_lane_gembs
BACK
SAMPLE K006204_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
224603094 |
100% |
20278194796 |
100% |
| Mapped |
222845184 |
99.22 % |
20102403796 |
99.13 % |
| Passed |
186883921 |
83.21 % |
16506277496 |
81.40 % |
| NotPassed |
35961263 |
16.01 % |
3596126300 |
17.73 % |
| |
|
|
|
|
| LowMAPQ |
30114774 |
13.41 % |
3011477400 |
14.85 % |
| MateUnmapped |
1757910 |
0.78 % |
175791000 |
0.87 % |
| Duplicate |
661392 |
0.29 % |
66139200 |
0.33 % |
| BadOrientation |
6 |
0.00 % |
600 |
0.00 % |
| LargeInsertSize |
1244 |
0.00 % |
124400 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
5183847 |
2.31 % |
518384700 |
2.56 % |
| Unmapped |
1757910 |
0.78 % |
175791000 |
0.87 % |
Base Level Counts
| Bases |
# |
% |
| Total |
18648261500 |
100% |
| Passed |
15424663725 |
82.71 % |
| Trimmed |
819391385 |
4.39 % |
| Clipped |
27742014 |
0.15 % |
| Overlapping |
2114241990 |
11.34 % |
| LowQuality |
262222386 |
1.41 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |