/EXTERNAL McGill EMC/K006206_1_lane_gembs

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SAMPLE K006206_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 351713016 100.00 % 175856508 100.00 % 175856508 100.00 %
General Reads 343754762 97.74 % 172263993 97.96 % 171490769 97.52 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 272887 0.08 % 136700 0.08 % 136187 0.08 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 7685367 2.19 % 3455815 1.97 % 4229552 2.41 %
Bisulfite_reads C2T 175706419 49.96 % 88046389 50.07 % 87660030 49.85 %
Bisulfite_reads G2A 168321230 47.86 % 84354304 47.97 % 83966926 47.75 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 146477292
Average Unique 83.29 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 13772316039 38.77 % 5315225113 29.93 % 8457090926 47.61 %
Base Counts Overall C 3796042975 10.69 % 198708712 1.12 % 3597334263 20.25 %
Base Counts Overall G 3825560892 10.77 % 3628214576 20.43 % 197346316 1.11 %
Base Counts Overall T 13763636440 38.75 % 8440369494 47.52 % 5323266946 29.97 %
Base Counts Overall N 365458270 1.03 % 178989413 1.01 % 186468857 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9954981726105089
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 167554752



Mapping Quality

Mapping Quality Histogram
K006206_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006206_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0261.Bisulfite-Seq.DNA_Methylation.EGAX00001425299.release_6