/EXTERNAL McGill EMC/K006206_1_lane_gembs/McGill0261.Bisulfite-Seq.DNA_Methylation.EGAX00001425299.release_6

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SAMPLE K006206_1_lane_gembs LANE McGill0261.Bisulfite-Seq.DNA_Methylation.EGAX00001425299.release_6

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	351713016	100.00 %	175856508	100.00 %	175856508	100.00 %
General Reads	343754762	97.74 %	172263993	97.96 %	171490769	97.52 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	272887	0.08 %	136700	0.08 %	136187	0.08 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	7685367	2.19 %	3455815	1.97 %	4229552	2.41 %
Bisulfite_reads C2T	175706419	49.96 %	88046389	50.07 %	87660030	49.85 %
Bisulfite_reads G2A	168321230	47.86 %	84354304	47.97 %	83966926	47.75 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	146477292
Average Unique	83.29 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	13772316039	38.77 %	5315225113	29.93 %	8457090926	47.61 %
Base Counts Overall C	3796042975	10.69 %	198708712	1.12 %	3597334263	20.25 %
Base Counts Overall G	3825560892	10.77 %	3628214576	20.43 %	197346316	1.11 %
Base Counts Overall T	13763636440	38.75 %	8440369494	47.52 %	5323266946	29.97 %
Base Counts Overall N	365458270	1.03 %	178989413	1.01 %	186468857	1.05 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9954981726105089
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	167554752

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	175856508
100	175856508

Insert Size Plot

Insert Size Histogram