/EXTERNAL McGill EMC/mapping_coverage/K006206_1_lane_gembs
BACK
SAMPLE K006206_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
341542839 |
100% |
31004644235 |
100% |
| Mapped |
339262604 |
99.33 % |
30776620735 |
99.26 % |
| Passed |
290345732 |
85.01 % |
25884933535 |
83.49 % |
| NotPassed |
48916872 |
14.32 % |
4891687200 |
15.78 % |
| |
|
|
|
|
| LowMAPQ |
42986564 |
12.59 % |
4298656400 |
13.86 % |
| MateUnmapped |
2280235 |
0.67 % |
228023500 |
0.74 % |
| Duplicate |
2216605 |
0.65 % |
221660500 |
0.71 % |
| BadOrientation |
12 |
0.00 % |
1200 |
0.00 % |
| LargeInsertSize |
1398 |
0.00 % |
139800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3712293 |
1.09 % |
371229300 |
1.20 % |
| Unmapped |
2280235 |
0.67 % |
228023500 |
0.74 % |
Base Level Counts
| Bases |
# |
% |
| Total |
29022522500 |
100% |
| Passed |
24232936651 |
83.50 % |
| Trimmed |
1305961518 |
4.50 % |
| Clipped |
31477526 |
0.11 % |
| Overlapping |
3106111439 |
10.70 % |
| LowQuality |
346035366 |
1.19 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |