/EXTERNAL McGill EMC/methylation/K006206_1_lane_gembs

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SAMPLE K006206_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26275355 6475597 24.65 %
NonRefCpG 301634 44805 14.85 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006206_1_lane_gembs_coverage_refCpG.png ./IMG//K006206_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006206_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006206_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006206_1_lane_gembs_quality_refcpg.png ./IMG//K006206_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006206_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6944988 13.85 % 861006 4.93 % 104951 18.68 % 7103 4.94 %
Intermediate (0.3-0.7) 15368396 30.65 % 3729222 21.35 % 181607 32.33 % 31513 21.93 %
Methylated (0.7-1) 27823489 55.50 % 12873985 73.72 % 275179 48.99 % 105058 73.12 %
Median Methylation 0.740 0.840 0.690 0.840