/EXTERNAL McGill EMC/K006208_1_lane_gembs

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SAMPLE K006208_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 386836592 100.00 % 193418296 100.00 % 193418296 100.00 %
General Reads 377360510 97.55 % 189270268 97.86 % 188090242 97.25 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 96170 0.02 % 48248 0.02 % 47922 0.02 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 9379912 2.42 % 4099780 2.12 % 5280132 2.73 %
Bisulfite_reads C2T 194806532 50.36 % 97712573 50.52 % 97093959 50.20 %
Bisulfite_reads G2A 182650148 47.22 % 91605943 47.36 % 91044205 47.07 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 143373416
Average Unique 74.13 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 14560972256 37.27 % 6025546084 30.84 % 8535426172 43.69 %
Base Counts Overall C 4774191138 12.22 % 587831466 3.01 % 4186359672 21.43 %
Base Counts Overall G 4946810952 12.66 % 4306765169 22.05 % 640045783 3.28 %
Base Counts Overall T 14361341619 36.76 % 8418750983 43.10 % 5942590636 30.42 %
Base Counts Overall N 427179827 1.09 % 196354194 1.01 % 230825633 1.18 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9134673033924691
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 168870888



Mapping Quality

Mapping Quality Histogram
K006208_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006208_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0112.Bisulfite-Seq.DNA_Methylation.EGAX00001425218.release_6