/EXTERNAL McGill EMC/mapping_coverage/K006208_1_lane_gembs
BACK
SAMPLE K006208_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
376336538 |
100% |
32578897304 |
100% |
| Mapped |
372365136 |
98.94 % |
32181757104 |
98.78 % |
| Passed |
287540038 |
76.41 % |
23699247304 |
72.74 % |
| NotPassed |
84825098 |
22.54 % |
8482509800 |
26.04 % |
| |
|
|
|
|
| LowMAPQ |
79770208 |
21.20 % |
7977020800 |
24.49 % |
| MateUnmapped |
3971402 |
1.06 % |
397140200 |
1.22 % |
| Duplicate |
1045702 |
0.28 % |
104570200 |
0.32 % |
| BadOrientation |
62 |
0.00 % |
6200 |
0.00 % |
| LargeInsertSize |
6796 |
0.00 % |
679600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
4002330 |
1.06 % |
400233000 |
1.23 % |
| Unmapped |
3971402 |
1.06 % |
397140200 |
1.22 % |
Base Level Counts
| Bases |
# |
% |
| Total |
28735992500 |
100% |
| Passed |
22009805622 |
76.59 % |
| Trimmed |
1255564271 |
4.37 % |
| Clipped |
49930410 |
0.17 % |
| Overlapping |
4986814786 |
17.35 % |
| LowQuality |
433877411 |
1.51 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |