/EXTERNAL McGill EMC/methylation/K006208_1_lane_gembs

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SAMPLE K006208_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26343742 7829941 29.72 %
NonRefCpG 325232 54684 16.81 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006208_1_lane_gembs_coverage_refCpG.png ./IMG//K006208_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006208_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006208_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006208_1_lane_gembs_quality_refcpg.png ./IMG//K006208_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006208_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4904318 10.14 % 532361 2.87 % 105653 17.97 % 8616 5.30 %
Intermediate (0.3-0.7) 13085078 27.06 % 3397260 18.31 % 170493 29.00 % 32663 20.10 %
Methylated (0.7-1) 30373835 62.80 % 14620086 78.82 % 311860 53.04 % 121265 74.60 %
Median Methylation 0.790 0.870 0.720 0.850