/EXTERNAL McGill EMC/mapping_coverage/K006209_1_lane_gembs
BACK
SAMPLE K006209_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1782825548 |
100% |
196844003568 |
100% |
| Mapped |
1737156436 |
97.44 % |
190595853395 |
96.83 % |
| Passed |
1281221066 |
71.86 % |
128019955180 |
65.04 % |
| NotPassed |
455935370 |
25.57 % |
62575898215 |
31.79 % |
| |
|
|
|
|
| LowMAPQ |
333721276 |
18.72 % |
46274890600 |
23.51 % |
| MateUnmapped |
45669112 |
2.56 % |
6248150173 |
3.17 % |
| Duplicate |
55860011 |
3.13 % |
7485457980 |
3.80 % |
| BadOrientation |
242 |
0.00 % |
33520 |
0.00 % |
| LargeInsertSize |
531458 |
0.03 % |
73790232 |
0.04 % |
| |
|
|
|
|
| NotCorrectlyAligned |
65822383 |
3.69 % |
8741725883 |
4.44 % |
| Unmapped |
45669112 |
2.56 % |
6248150173 |
3.17 % |
Base Level Counts
| Bases |
# |
% |
| Total |
171878394409 |
100% |
| Passed |
117472810092 |
68.35 % |
| Trimmed |
5144699836 |
2.99 % |
| Clipped |
890100898 |
0.52 % |
| Overlapping |
42968338331 |
25.00 % |
| LowQuality |
5402445252 |
3.14 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |