/EXTERNAL McGill EMC/mapping_coverage/K006214_1_lane_gembs
BACK
SAMPLE K006214_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1183472262 |
100% |
105175571012 |
100% |
| Mapped |
1175163499 |
99.30 % |
104344694712 |
99.21 % |
| Passed |
994006377 |
83.99 % |
86228982512 |
81.99 % |
| NotPassed |
181157122 |
15.31 % |
18115712200 |
17.22 % |
| |
|
|
|
|
| LowMAPQ |
135716974 |
11.47 % |
13571697400 |
12.90 % |
| MateUnmapped |
8308763 |
0.70 % |
830876300 |
0.79 % |
| Duplicate |
13168157 |
1.11 % |
1316815700 |
1.25 % |
| BadOrientation |
48 |
0.00 % |
4800 |
0.00 % |
| LargeInsertSize |
171988 |
0.01 % |
17198800 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
32099955 |
2.71 % |
3209995500 |
3.05 % |
| Unmapped |
8308763 |
0.70 % |
830876300 |
0.79 % |
Base Level Counts
| Bases |
# |
% |
| Total |
99391909600 |
100% |
| Passed |
80842189081 |
81.34 % |
| Trimmed |
4433019534 |
4.46 % |
| Clipped |
97289511 |
0.10 % |
| Overlapping |
13065637577 |
13.15 % |
| LowQuality |
953773897 |
0.96 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |