/EXTERNAL McGill EMC/K006216_1_lane_gembs

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SAMPLE K006216_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 662673182 100.00 % 331336591 100.00 % 331336591 100.00 %
General Reads 649417958 98.00 % 325340392 98.19 % 324077566 97.81 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 8379 0.00 % 4193 0.00 % 4186 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 13246845 2.00 % 5992006 1.81 % 7254839 2.19 %
Bisulfite_reads C2T 331763527 50.06 % 166201876 50.16 % 165561651 49.97 %
Bisulfite_reads G2A 317662810 47.94 % 159142709 48.03 % 158520101 47.84 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 267233296
Average Unique 80.65 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 26196487109 39.14 % 10460414966 31.26 % 15736072143 47.02 %
Base Counts Overall C 7007648551 10.47 % 373272106 1.12 % 6634376445 19.82 %
Base Counts Overall G 7011897236 10.48 % 6663421834 19.91 % 348475402 1.04 %
Base Counts Overall T 26034889058 38.90 % 15626838021 46.70 % 10408051037 31.10 %
Base Counts Overall N 679069428 1.01 % 341048764 1.02 % 338020664 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.990898135657678
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 305498392



Mapping Quality

Mapping Quality Histogram
K006216_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006216_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0478.Bisulfite-Seq.DNA_Methylation.EGAX00001425416.release_6