/EXTERNAL McGill EMC/K006216_1_lane_gembs/McGill0478.Bisulfite-Seq.DNA_Methylation.EGAX00001425416.release_6

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SAMPLE K006216_1_lane_gembs LANE McGill0478.Bisulfite-Seq.DNA_Methylation.EGAX00001425416.release_6

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	662673182	100.00 %	331336591	100.00 %	331336591	100.00 %
General Reads	649417958	98.00 %	325340392	98.19 %	324077566	97.81 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	8379	0.00 %	4193	0.00 %	4186	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	13246845	2.00 %	5992006	1.81 %	7254839	2.19 %
Bisulfite_reads C2T	331763527	50.06 %	166201876	50.16 %	165561651	49.97 %
Bisulfite_reads G2A	317662810	47.94 %	159142709	48.03 %	158520101	47.84 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	267233296
Average Unique	80.65 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	26196487109	39.14 %	10460414966	31.26 %	15736072143	47.02 %
Base Counts Overall C	7007648551	10.47 %	373272106	1.12 %	6634376445	19.82 %
Base Counts Overall G	7011897236	10.48 %	6663421834	19.91 %	348475402	1.04 %
Base Counts Overall T	26034889058	38.90 %	15626838021	46.70 %	10408051037	31.10 %
Base Counts Overall N	679069428	1.01 %	341048764	1.02 %	338020664	1.01 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.990898135657678
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	305498392

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	331336591
100	331336591

Insert Size Plot

Insert Size Histogram