/EXTERNAL McGill EMC/mapping_coverage/K006216_1_lane_gembs
BACK
SAMPLE K006216_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
638556822 |
100% |
55223650418 |
100% |
| Mapped |
633801509 |
99.26 % |
54748119118 |
99.14 % |
| Passed |
516419646 |
80.87 % |
43009932818 |
77.88 % |
| NotPassed |
117381863 |
18.38 % |
11738186300 |
21.26 % |
| |
|
|
|
|
| LowMAPQ |
80304464 |
12.58 % |
8030446400 |
14.54 % |
| MateUnmapped |
4755313 |
0.74 % |
475531300 |
0.86 % |
| Duplicate |
10908654 |
1.71 % |
1090865400 |
1.98 % |
| BadOrientation |
46 |
0.00 % |
4600 |
0.00 % |
| LargeInsertSize |
130274 |
0.02 % |
13027400 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
26038425 |
4.08 % |
2603842500 |
4.72 % |
| Unmapped |
4755313 |
0.74 % |
475531300 |
0.86 % |
Base Level Counts
| Bases |
# |
% |
| Total |
51636335700 |
100% |
| Passed |
40372718781 |
78.19 % |
| Trimmed |
2254174093 |
4.37 % |
| Clipped |
49212907 |
0.10 % |
| Overlapping |
8577189975 |
16.61 % |
| LowQuality |
383039944 |
0.74 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |