/EXTERNAL McGill EMC/methylation/K006216_1_lane_gembs

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SAMPLE K006216_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26197036 13072611 49.90 %
NonRefCpG 217135 72452 33.37 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006216_1_lane_gembs_coverage_refCpG.png ./IMG//K006216_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006216_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006216_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006216_1_lane_gembs_quality_refcpg.png ./IMG//K006216_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006216_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5750381 11.40 % 1293049 4.26 % 71495 17.72 % 9168 4.87 %
Intermediate (0.3-0.7) 13181804 26.13 % 6201159 20.45 % 114427 28.36 % 39800 21.13 %
Methylated (0.7-1) 31517228 62.47 % 22827915 75.28 % 217600 53.93 % 139430 74.01 %
Median Methylation 0.790 0.850 0.730 0.840