/EXTERNAL McGill EMC/K006219_1_lane_gembs/McGill0476.Bisulfite-Seq.DNA_Methylation.EGAX00001425398.release_6

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SAMPLE K006219_1_lane_gembs LANE McGill0476.Bisulfite-Seq.DNA_Methylation.EGAX00001425398.release_6

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	1005270708	100.00 %	502635354	100.00 %	502635354	100.00 %
General Reads	985285267	98.01 %	494022976	98.29 %	491262291	97.74 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	15848	0.00 %	7942	0.00 %	7906	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	19969593	1.99 %	8604436	1.71 %	11365157	2.26 %
Bisulfite_reads C2T	503134140	50.05 %	252258805	50.19 %	250875335	49.91 %
Bisulfite_reads G2A	482166975	47.96 %	241772113	48.10 %	240394862	47.83 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	410038573
Average Unique	81.58 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	39807163353	39.21 %	16001376626	31.52 %	23805786727	46.89 %
Base Counts Overall C	10580107960	10.42 %	584189147	1.15 %	9995918813	19.69 %
Base Counts Overall G	10619316769	10.46 %	10064232545	19.82 %	555084224	1.09 %
Base Counts Overall T	39510459098	38.91 %	23607094761	46.50 %	15903364337	31.33 %
Base Counts Overall N	1015294328	1.00 %	509277675	1.00 %	506016653	1.00 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9900125322364898
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	465952648

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
100	502635354
100	502635354

Insert Size Plot

Insert Size Histogram