/EXTERNAL McGill EMC/mapping_coverage/K006219_1_lane_gembs
BACK
SAMPLE K006219_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
974445061 |
100% |
83139531585 |
100% |
| Mapped |
966791379 |
99.21 % |
82374163385 |
99.08 % |
| Passed |
804180209 |
82.53 % |
66113046385 |
79.52 % |
| NotPassed |
162611170 |
16.69 % |
16261117000 |
19.56 % |
| |
|
|
|
|
| LowMAPQ |
118334288 |
12.14 % |
11833428800 |
14.23 % |
| MateUnmapped |
7653682 |
0.79 % |
765368200 |
0.92 % |
| Duplicate |
10877943 |
1.12 % |
1087794300 |
1.31 % |
| BadOrientation |
46 |
0.00 % |
4600 |
0.00 % |
| LargeInsertSize |
177102 |
0.02 % |
17710200 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
33221791 |
3.41 % |
3322179100 |
4.00 % |
| Unmapped |
7653682 |
0.79 % |
765368200 |
0.92 % |
Base Level Counts
| Bases |
# |
% |
| Total |
80413803300 |
100% |
| Passed |
61868888411 |
76.94 % |
| Trimmed |
3468655953 |
4.31 % |
| Clipped |
80611441 |
0.10 % |
| Overlapping |
14220145474 |
17.68 % |
| LowQuality |
775502021 |
0.96 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |