/EXTERNAL McGill EMC/methylation/K006219_1_lane_gembs

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SAMPLE K006219_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26387380 18456222 69.94 %
NonRefCpG 164731 80782 49.04 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006219_1_lane_gembs_coverage_refCpG.png ./IMG//K006219_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006219_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006219_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006219_1_lane_gembs_quality_refcpg.png ./IMG//K006219_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006219_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5306253 10.30 % 2013513 5.02 % 38635 12.62 % 7449 3.89 %
Intermediate (0.3-0.7) 11528188 22.37 % 7772635 19.36 % 78385 25.60 % 38557 20.15 %
Methylated (0.7-1) 34701149 67.33 % 30354669 75.62 % 189227 61.79 % 145375 75.96 %
Median Methylation 0.810 0.850 0.780 0.850