/EXTERNAL McGill EMC/K006221_1_lane_gembs

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SAMPLE K006221_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 253159036 100.00 % 126579518 100.00 % 126579518 100.00 %
General Reads 248055254 97.98 % 124478322 98.34 % 123576932 97.63 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 950043 0.38 % 477009 0.38 % 473034 0.37 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 4153739 1.64 % 1624187 1.28 % 2529552 2.00 %
Bisulfite_reads C2T 127023453 50.18 % 63739997 50.36 % 63283456 50.00 %
Bisulfite_reads G2A 121981844 48.18 % 61215334 48.36 % 60766510 48.01 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 103838616
Average Unique 82.03 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 10058398035 39.34 % 3946778023 30.87 % 6111620012 47.80 %
Base Counts Overall C 2625168920 10.27 % 125184908 0.98 % 2499984012 19.55 %
Base Counts Overall G 2670419355 10.44 % 2545914020 19.91 % 124505335 0.97 %
Base Counts Overall T 9956653076 38.94 % 6039414011 47.24 % 3917239065 30.64 %
Base Counts Overall N 258423250 1.01 % 127240356 1.00 % 131182894 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9956812893532638
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 118457426



Mapping Quality

Mapping Quality Histogram
K006221_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006221_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
McGill0180.Bisulfite-Seq.DNA_Methylation.EGAX00001425285.release_6