/EXTERNAL McGill EMC/mapping_coverage/K006221_1_lane_gembs
BACK
SAMPLE K006221_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
245485470 |
100% |
21768555036 |
100% |
| Mapped |
243103236 |
99.03 % |
21530331636 |
98.91 % |
| Passed |
203438194 |
82.87 % |
17563827436 |
80.68 % |
| NotPassed |
39665042 |
16.16 % |
3966504200 |
18.22 % |
| |
|
|
|
|
| LowMAPQ |
31664188 |
12.90 % |
3166418800 |
14.55 % |
| MateUnmapped |
2382234 |
0.97 % |
238223400 |
1.09 % |
| Duplicate |
2574980 |
1.05 % |
257498000 |
1.18 % |
| BadOrientation |
14 |
0.00 % |
1400 |
0.00 % |
| LargeInsertSize |
1510 |
0.00 % |
151000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
5424350 |
2.21 % |
542435000 |
2.49 % |
| Unmapped |
2382234 |
0.97 % |
238223400 |
1.09 % |
Base Level Counts
| Bases |
# |
% |
| Total |
20312939200 |
100% |
| Passed |
16328650080 |
80.39 % |
| Trimmed |
894961862 |
4.41 % |
| Clipped |
24926208 |
0.12 % |
| Overlapping |
2724185556 |
13.41 % |
| LowQuality |
340215494 |
1.67 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |