/EXTERNAL McGill EMC/methylation/K006221_1_lane_gembs

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SAMPLE K006221_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25447993 1614302 6.34 %
NonRefCpG 357546 10002 2.80 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006221_1_lane_gembs_coverage_refCpG.png ./IMG//K006221_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006221_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006221_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006221_1_lane_gembs_quality_refcpg.png ./IMG//K006221_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006221_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6438598 14.32 % 140889 2.97 % 155266 24.54 % 1860 4.52 %
Intermediate (0.3-0.7) 15153371 33.69 % 960645 20.25 % 217339 34.35 % 8691 21.09 %
Methylated (0.7-1) 23385724 51.99 % 3641736 76.78 % 260164 41.12 % 30653 74.39 %
Median Methylation 0.710 0.850 0.610 0.850