/EXTERNAL BLUEPRINT/K011719_1_lane_gembs

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SAMPLE K011719_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 132791584 100.00 % 66395792 100.00 % 66395792 100.00 %
General Reads 126073384 94.94 % 63362364 95.43 % 62711020 94.45 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5 0.00 % 3 0.00 % 2 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 6718195 5.06 % 3033425 4.57 % 3684770 5.55 %
Bisulfite_reads C2T 65209070 49.11 % 32764430 49.35 % 32444640 48.87 %
Bisulfite_reads G2A 60864319 45.83 % 30597937 46.08 % 30266382 45.58 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 47379946
Average Unique 71.36 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 3568154973 34.90 % 1392836597 27.24 % 2175318376 42.55 %
Base Counts Overall C 1495703722 14.63 % 231760730 4.53 % 1263942992 24.72 %
Base Counts Overall G 1535606333 15.02 % 1270204456 24.85 % 265401877 5.19 %
Base Counts Overall T 3491706684 34.15 % 2150950339 42.07 % 1340756345 26.23 %
Base Counts Overall N 133780256 1.31 % 66723862 1.31 % 67056394 1.31 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 58481796



Mapping Quality

Mapping Quality Histogram
K011719_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K011719_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011719_1894661_2