/EXTERNAL BLUEPRINT/mapping_coverage/K011719_1_lane_gembs
BACK
SAMPLE K011719_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
105349922 |
100% |
7343102531 |
100% |
| Mapped |
104072957 |
98.79 % |
7246053191 |
98.68 % |
| Passed |
55454082 |
52.64 % |
3551018691 |
48.36 % |
| NotPassed |
48618875 |
46.15 % |
3695034500 |
50.32 % |
| |
|
|
|
|
| LowMAPQ |
26677510 |
25.32 % |
2027490760 |
27.61 % |
| MateUnmapped |
1276965 |
1.21 % |
97049340 |
1.32 % |
| Duplicate |
20775302 |
19.72 % |
1578922952 |
21.50 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
3572 |
0.00 % |
271472 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1162491 |
1.10 % |
88349316 |
1.20 % |
| Unmapped |
1276965 |
1.21 % |
97049340 |
1.32 % |
Base Level Counts
| Bases |
# |
% |
| Total |
3994044340 |
100% |
| Passed |
3213335029 |
80.45 % |
| Trimmed |
231878440 |
5.81 % |
| Clipped |
10267607 |
0.26 % |
| Overlapping |
432758042 |
10.84 % |
| LowQuality |
105805222 |
2.65 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |