/EXTERNAL BLUEPRINT/methylation/K011719_1_lane_gembs

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SAMPLE K011719_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 18015605 78196 0.43 %
NonRefCpG 859032 203 0.02 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K011719_1_lane_gembs_coverage_refCpG.png ./IMG//K011719_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K011719_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K011719_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K011719_1_lane_gembs_quality_refcpg.png ./IMG//K011719_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K011719_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3619040 15.22 % 7084 3.56 % 267266 26.17 % 91 8.35 %
Intermediate (0.3-0.7) 8183749 34.41 % 35480 17.81 % 379567 37.16 % 237 21.64 %
Methylated (0.7-1) 11982993 50.38 % 156609 78.63 % 374529 36.67 % 767 70.01 %
Median Methylation 0.700 0.870 0.560 0.840