/EXTERNAL BLUEPRINT/mapping_coverage/K011720_1_lane_gembs
BACK
SAMPLE K011720_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
65252294 |
100% |
4500481537 |
100% |
| Mapped |
64500006 |
98.85 % |
4443307649 |
98.73 % |
| Passed |
38784917 |
59.44 % |
2488960885 |
55.30 % |
| NotPassed |
25715089 |
39.41 % |
1954346764 |
43.43 % |
| |
|
|
|
|
| LowMAPQ |
15327682 |
23.49 % |
1164903832 |
25.88 % |
| MateUnmapped |
752288 |
1.15 % |
57173888 |
1.27 % |
| Duplicate |
9685689 |
14.84 % |
736112364 |
16.36 % |
| BadOrientation |
4 |
0.00 % |
304 |
0.00 % |
| LargeInsertSize |
2820 |
0.00 % |
214320 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
698894 |
1.07 % |
53115944 |
1.18 % |
| Unmapped |
752288 |
1.15 % |
57173888 |
1.27 % |
Base Level Counts
| Bases |
# |
% |
| Total |
2780172796 |
100% |
| Passed |
2246368783 |
80.80 % |
| Trimmed |
162131496 |
5.83 % |
| Clipped |
7534977 |
0.27 % |
| Overlapping |
283676934 |
10.20 % |
| LowQuality |
80460606 |
2.89 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |