/EXTERNAL BLUEPRINT/methylation/K011720_1_lane_gembs

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SAMPLE K011720_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 15446784 9599 0.06 %
NonRefCpG 846183 18 0.00 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K011720_1_lane_gembs_coverage_refCpG.png ./IMG//K011720_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K011720_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K011720_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K011720_1_lane_gembs_quality_refcpg.png ./IMG//K011720_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K011720_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 2982156 15.69 % 728 2.94 % 244736 25.47 % 10 7.14 %
Intermediate (0.3-0.7) 6804899 35.80 % 4459 18.00 % 362010 37.68 % 30 21.49 %
Methylated (0.7-1) 9221689 48.51 % 19592 79.07 % 354129 36.85 % 100 71.38 %
Median Methylation 0.680 0.870 0.570 0.840