/EXTERNAL BLUEPRINT/mapping_coverage/K011718_1_lane_gembs
BACK
SAMPLE K011718_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
50354885 |
100% |
3449014676 |
100% |
| Mapped |
49710803 |
98.72 % |
3400064444 |
98.58 % |
| Passed |
32034917 |
63.62 % |
2056697108 |
59.63 % |
| NotPassed |
17675886 |
35.10 % |
1343367336 |
38.95 % |
| |
|
|
|
|
| LowMAPQ |
11584248 |
23.01 % |
880402848 |
25.53 % |
| MateUnmapped |
644082 |
1.28 % |
48950232 |
1.42 % |
| Duplicate |
5480044 |
10.88 % |
416483344 |
12.08 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
2198 |
0.00 % |
167048 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
609396 |
1.21 % |
46314096 |
1.34 % |
| Unmapped |
644082 |
1.28 % |
48950232 |
1.42 % |
Base Level Counts
| Bases |
# |
% |
| Total |
2297063596 |
100% |
| Passed |
1812743215 |
78.92 % |
| Trimmed |
132969840 |
5.79 % |
| Clipped |
6303445 |
0.27 % |
| Overlapping |
234063043 |
10.19 % |
| LowQuality |
110984053 |
4.83 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |