/EXTERNAL BLUEPRINT/methylation/K011718_1_lane_gembs

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SAMPLE K011718_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 13618063 2319 0.02 %
NonRefCpG 931746 10 0.00 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K011718_1_lane_gembs_coverage_refCpG.png ./IMG//K011718_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K011718_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K011718_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K011718_1_lane_gembs_quality_refcpg.png ./IMG//K011718_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K011718_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 2522403 15.53 % 186 3.01 % 231143 22.51 % 3 6.84 %
Intermediate (0.3-0.7) 5912920 36.41 % 1172 18.85 % 390329 38.01 % 9 22.60 %
Methylated (0.7-1) 7803297 48.05 % 4859 78.15 % 405306 39.47 % 31 70.57 %
Median Methylation 0.680 0.860 0.600 0.850